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  1. [1] Kwak Y. An update on Trichoderma mitogenomes: Complete de novo mitochondrial genome of the fungal biocontrol agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an ex - neotype strain CBS 226.95, and tracing the evolutionary divergences of mitogenomes in Trichoderma. Microorganisms. 2021, 9(8):1564.
  2. [2] Wallis C, Chen J, Perez de Leon A. Mitochondrial Genome Resource of a grapevine strain of Trichoderma harzianum, a potential biological control agent for fungal canker diseases. PhytoFrontiers. 2021.
  3. [3] Castrillo M, Bich G, Zapata P, Saparrat M, Villalba L. Trichoderma Koningiopsis (Hypocreaceae) has the smallest mitogenome of the genus Trichoderma. Research Square. 2021.
  4. [4] Li WC, Lin TC, Chen CL, Liu HC, Lin HN, Chao JL, Hsieh CH, Ni HF, Chen RS, Wang TF. Complete genome sequences and genome - wide characterization of Trichoderma biocontrol agents provide new insights into their evolution and variation in genome organization, sexual development, and fungal - plant interactions. Microbiol Spectr. 2021,9(3):e0066321.
  5. [5] Chung D, Kwon YM, Yang Y. Telomere - to - telomere genome assembly of asparaginase - producing Trichoderma simmonsii. BMC Genomics. 2021,22(1):830.
  6. [6] Kwak Y. Complete mitochondrial genome of the fungal biocontrol agent Trichoderma atroviride: Genomic features, comparative analysis and insight into the mitochondrial evolution in Trichoderma. Front Microbiol. 2020,11:785.
  7. [7] Venice F, Davolos D, Spina F, Poli A, Prigione VP, Varese GC, Ghignone S. Genome sequence of Trichoderma lixii MUT3171, a promising strain for mycoremediation of PAH - contaminated sites. Microorganisms. 2020,8(9):1258.
  8. [8] Özkalekaya E, Doğan Ö, Budak M, Korkmaz E. An insight into mitochondrial genomes of Trichoderma afroharzianum strains: a comparative and evolutionary analysis. Research Square. 2022.
  9. [9] Fonseca PLC, Badotti F, De - Paula RB, Araújo DS, Bortolini DE, Del - Bem LE, Azevedo VA, Brenig B, Aguiar ERGR, Góes - Neto A. Exploring the relationship among divergence time and coding and non - coding elements in the shaping of fungal mitochondrial genomes. Frontiers in Microbiology. 2020,11:765.
  10. [10] Chambergo FS, Bonaccorsi ED, Ferreira AJ, Ramos AS, Ferreira Júnior JR, Abrahão - Neto J, Farah JP, El - Dorry H. Elucidation of the metabolic fate of glucose in the filamentous fungus Trichoderma reesei using expressed sequence tag (EST) analysis and cDNA microarrays. J Biol Chem. 2002.277(16):13983 - 13988.
  11. [11] Lee HY, Jo JW, Kwak YN, Lee H, Ryu H, Sung J, So YS, Kim CS, Chung JW. The complete mitochondrial genome of the poisonous mushroom Trichoderma cornu - damae (Hypocreaceae). Mitochondrial DNA Part B: Resources. 2022,7(11):1899 - 1901.
  12. [12] Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP. Massive lateral transfer of genes encoding plant cell wall - degrading enzymes to the mycoparasitic fungus Trichoderma from its plant - associated hosts. PLoS Genet. 2018,14(4):e1007322.
  13. [13] Li L, Zeng X, Chen J, Tian J, Huang J, Su S. Genome sequence of the fungus Trichoderma asperellum SM - 12F1 revealing candidate functions of growth promotion, biocontrol, and bioremediation. PhytoFrontiers. 2021,1:239 - 243.
  14. [14] Takahashi H, Sakagawa E, Toyoda R, Motomura T, Murase M, Takahashi A, Fukuyoshi S, Kanamasa S. Draft Genome Sequence of Glycoside Hydrolase - Producing Trichoderma asperellum Strain IC - 1. Microbiol Resour Announc. 2020,9(40):e00958 - 20.
  15. [15] Gortikov M, Wang Z, Steindorff AS, Grigoriev IV, Druzhinina IS, Townsend JP, Yarden O. Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales) Microbiol Resour Announc. 2022,11(2):e0099521.
  16. [16] Kubicek CP, Herrera - Estrella A, Seidl - Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas - Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes - Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel - Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez - Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández - Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti - Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo - Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol. 2011,12(4):R40.
  17. [17] Shi - Kunne X, Seidl MF, Faino L, Thomma BP. Draft genome sequence of a strain of cosmopolitan fungus Trichoderma atroviride. Genome Announc. 2015,3(3):e00287 - 15.
  18. [18] Singh NK, Blachowicz A, Romsdahl J, Wang C, Torok T, Venkateswaran K. Draft genome sequences of several fungal strains selected for exposure to microgravity at the international space station. Genome Announc. 2017,5(15):e01602 - 16.
  19. [19] Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm - Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn - Coleman N, Ward M, Brettin TS. Genome sequencing and analysis of the biomass - degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol. 2008,26(5):553 - 560.
  20. [20] Compant S, Gerbore J, Antonielli L, Brutel A, Schmoll M. Draft Genome Sequence of the Root - Colonizing Fungus Trichoderma harzianum B97. Genome Announc. 2017,5(13):e00137 - 17.
  21. [21] Steindorff AS, Ramada MH, Coelho AS, Miller RN, Pappas GJ Jr, Ulhoa CJ, Noronha EF. Identification of mycoparasitism - related genes against the phytopathogen Sclerotinia sclerotiorum through t Draft whole - genome sequence of Trichoderma gamsii T6085, a promising biocontrol agent of Fusarium head blight on wheat. Genome Announc. 2016,18;4(1):e01747 - 15. ranscriptome and expression profile analysis in Trichoderma harzianum. BMC Genomics. 2014,15:204.
  22. [22] Venice F, Davolos D, Spina F, Poli A, Prigione VP, Varese GC, Ghignone S. Genome sequence of Trichoderma lixii MUT3171, a promising strain for mycoremediation of PAH - contaminated sites. Microorganisms. 2020,8(9):1258.
  23. [23] Zhou Y, Wang Y, Chen K, Wu Y, Hu J, Wei Y, Li J, Yang H, Ryder M, Denton MD. Near - complete genomes of two Trichoderma species: A resource for biological control of plant pathogens. Mol Plant Microbe Interact. 2020,33(8):1036 - 1039.
  24. [24] Baroncelli R, Piaggeschi G, Fiorini L, Bertolini E, Zapparata A, Pè ME, Sarrocco S, Vannacci G. Draft Whole - Genome Sequence of the Biocontrol Agent Trichoderma harzianum T6776. Genome Announc. 2015,3(3):e00647 - 15.
  25. [25] Landeis A, Schmidt - Heydt M. Sequencing and Analysis of the Entire Genome of the Mycoparasitic Fungus Trichoderma afroharzianum. Microbiol Resour Announc. 2021,10(15):e00211 - 21.
  26. [26] Pachauri S, Sherkhane PD, Kumar V, Mukherjee PK. Whole genome sequencing reveals major deletions in the genome of M7, a gamma ray - induced mutant of Trichoderma virens that is repressed in conidiation, secondary metabolism, and mycoparasitism. Front Microbiol. 2020,11:1030.
  27. [27] Sherkhane PD, Bansal R, Banerjee K, Chatterjee S, Oulkar D, Jain P, Rosenfelder L, Elgavish S, Horwitz BA, Mukherjee PK. Genomics - driven discovery of the gliovirin biosynthesis gene cluster in the plant beneficial fungus Trichoderma virens. ChemistrySelect. 2017, 2(11):3347 - 3352.
  28. [28] Xie BB, Qin QL, Shi M, Chen LL, Shu YL, Luo Y, Wang XW, Rong JC, Gong ZT, Li D, Sun CY, Liu GM, Dong XW, Pang XH, Huang F, Liu W, Chen XL, Zhou BC, Zhang YZ, Song XY. Comparative genomics provide insights into evolution of trichoderma nutrition style. Genome Biol Evol. 2014,6(2):379 - 390.
  29. [29] Studholme DJ, Harris B, Le Cocq K, Winsbury R, Perera V, Ryder L, Ward JL, Beale MH, Thornton CR, Grant M. Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture - insights from genomics. Front Plant Sci. 2013,4:258.
  30. [30] Davolos D, Russo F, Canfora L, Malusà E, Tartanus M, Furmanczyk EM, Ceci A, Maggi O, Persiani AM. A genomic and transcriptomic study on the DDT - resistant Trichoderma hamatum FBL 587: First genetic data into mycoremediation strategies for DDT - polluted sites. Microorganisms. 2021,9(8):1680.
  31. [31] Baroncelli R, Zapparata A, Piaggeschi G, Sarrocco S, Vannacci G. Draft whole - genome sequence of Trichoderma gamsii T6085, a promising biocontrol agent of Fusarium head blight on wheat. Genome Announc. 2016,18;4(1):e01747 - 15.
  32. [32] Li Z, Liu T. The Highly Contiguous Genome Resource of Trichoderma semiorbis FJ059, a Biological Control Agent for Litchi Downy Blight. Phytopathology. 2022,112(6):1391 - 1395.
  33. [33] Wang C, Zeng ZQ, Zhuang WY. Comparative molecular evolution of chitinases in ascomycota with emphasis on mycoparasitism lifestyle. Microb Genom. 2021,7(9):000646.
  34. [34] Zhang Y, Zhuang WY. Trichoderma brevicrassum strain TC967 with capacities of diminishing cucumber disease caused by Rhizoctonia solani and promoting plant growth. Biological Control. 2020,142:104151.
  35. [35] Yang D, Pomraning K, Kopchinskiy A, Karimi Aghcheh R, Atanasova L, Chenthamara K, Baker SE, Zhang R, Shen Q, Freitag M, Kubicek CP, Druzhinina IS. Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei. Genome Announc. 2015,3(4):e00885 - 15.
  36. [36] Castrillo ML, Bich GÁ, Modenutti C, Turjanski A, Zapata PD, Villalba LL. First whole - genome shotgun sequence of a promising cellulase secretor, Trichoderma koningiopsis strain POS7. Genome Announc. 2017,5(37):e00823 - 17.
  37. [37] Proctor RH, McCormick SP, Kim HS, Cardoza RE, Stanley AM, Lindo L, Kelly A, Brown DW, Lee T, Vaughan MM, Alexander NJ, Busman M, Gutiérrez S. Evolution of structural diversity of trichothecenes, a family of toxins produced by plant pathogenic and entomopathogenic fungi. PLoS Pathog. 2018,14(4):e1006946.
  38. [38] Li Z, Liu T. High - Quality Genome Sequence Data of Trichoderma gracile HK011 - 1, a Fungal Antagonistic Agent Against Plant Pathogens. Plant Dis. 2022,106(3):1035 - 1038.
  39. [39] Fanelli F, Liuzzi VC, Logrieco AF, Altomare C. Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi - target biocontrol strain. BMC Genomics. 2018,19(1):662.
  40. [40] Cai F, Druzhinina IS. In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma. Fungal Diversity. 2021,107:1 - 69.
  41. [41] Madeira F, Madhusoodanan N, Lee J, Eusebi A, Niewielska A, Tivey ARN, Lopez R, Butcher S . The EMBL - EBI Job Dispatcher sequence analysis tools framework in 2024. Nucleic Acids Research. 2024,52(W1):W521 - W525.
  42. [42] Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post - analysis of large phylogenies. Bioinformatics. 2014,30(9):1312 - 3.
  43. [43] Flouri T, Izquierdo - Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. The phylogenetic likelihood library. Syst Biol. 2015,64(2):356 - 62.
  44. [44] Kozlov AM, Aberer AJ, Stamatakis A. ExaML version 3: a tool for phylogenomic analyses on supercomputers. Bioinformatics. 2015,31(15):2577 - 9.
  45. [45] Bartlett P, Eberhardt U, Schütz N, Beker H. Species determination using AI machine - learning algorithms: Hebeloma as a case study. IMA Fungus. 2022,13(1):13.
  46. [46] Chen K, Zhuang WY. Discovery from a large - scaled survey of Trichoderma in soil of China. Scientific Reports. 2017,7:9090.
  47. [47] Dou K, Lu Z, Wu Q, Ni M, Yu C, Wang M, Li Y, Wang X, Xie H, Chen J, Zhang C. MIST: a multilocusidentification system for Trichoderma. Appl Environ Microbiol. 2020,86(18):e01532 - 20.
  48. [48] James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung GH, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüssler A, Longcore JE, O'Donnell K, Mozley - Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann - Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R. Reconstructing the early evolution of fungi using a six - gene phylogeny. Nature. 2006,443(7113):818 - 822.
  49. [49] Gu X, Wang R, Sun Q, Wu B, Sun JZ. Four new species of Trichoderma in the Harzianum clade from northern China. MycoKeys. 2020,73:109–132.
  50. [50] Zhao R, Chen KY, Mao LJ, Zhang CL. Eleven new species of Trichoderma (Hypocreaceae, Hypocreales) from China. Mycology. 2024,16(1):180 - 209.